Landsman D - Search Results

1

COG database update 2024.

Galperin MY, Vera Alvarez R, Karamycheva S, Makarova KS, Wolf YI, Landsman D, Koonin EV. Galperin MY, et al. Among authors: landsman d. Nucleic Acids Res. 2025 Jan 6;53(D1):D356-D363. doi: 10.1093/nar/gkae983. Nucleic Acids Res. 2025. PMID: 39494517 Free PMC article.

2

COG database update: focus on microbial diversity, model organisms, and widespread pathogens.

Galperin MY, Wolf YI, Makarova KS, Vera Alvarez R, Landsman D, Koonin EV. Galperin MY, et al. Among authors: landsman d. Nucleic Acids Res. 2021 Jan 8;49(D1):D274-D281. doi: 10.1093/nar/gkaa1018. Nucleic Acids Res. 2021. PMID: 33167031 Free PMC article.

3

Workflow and web application for annotating NCBI BioProject transcriptome data.

Vera Alvarez R, Medeiros Vidal N, Garzón-Martínez GA, Barrero LS, Landsman D, Mariño-Ramírez L. Vera Alvarez R, et al. Among authors: landsman d. Database (Oxford). 2017 Jan 1;2017:bax008. doi: 10.1093/database/bax008. Database (Oxford). 2017. PMID: 28605765 Free PMC article.

4

TPMCalculator: one-step software to quantify mRNA abundance of genomic features.

Vera Alvarez R, Pongor LS, Mariño-Ramírez L, Landsman D. Vera Alvarez R, et al. Among authors: landsman d. Bioinformatics. 2019 Jun 1;35(11):1960-1962. doi: 10.1093/bioinformatics/bty896. Bioinformatics. 2019. PMID: 30379987 Free PMC article.

5

PM4NGS, a project management framework for next-generation sequencing data analysis.

Vera Alvarez R, Pongor L, Mariño-Ramírez L, Landsman D. Vera Alvarez R, et al. Among authors: landsman d. Gigascience. 2021 Jan 7;10(1):giaa141. doi: 10.1093/gigascience/giaa141. Gigascience. 2021. PMID: 33410471 Free PMC article.

6

Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006.

Gamez RM, Rodríguez F, Vidal NM, Ramirez S, Vera Alvarez R, Landsman D, Mariño-Ramírez L. Gamez RM, et al. Among authors: landsman d. BMC Genomics. 2019 May 14;20(1):378. doi: 10.1186/s12864-019-5763-5. BMC Genomics. 2019. PMID: 31088352 Free PMC article.

7

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks.

Pongor LS, Gross JM, Vera Alvarez R, Murai J, Jang SM, Zhang H, Redon C, Fu H, Huang SY, Thakur B, Baris A, Marino-Ramirez L, Landsman D, Aladjem MI, Pommier Y. Pongor LS, et al. Among authors: landsman d. Epigenetics Chromatin. 2020 Apr 22;13(1):21. doi: 10.1186/s13072-020-00343-x. Epigenetics Chromatin. 2020. PMID: 32321568 Free PMC article.

8

The Histone Database.

Sullivan S, Sink DW, Trout KL, Makalowska I, Taylor PM, Baxevanis AD, Landsman D. Sullivan S, et al. Among authors: landsman d. Nucleic Acids Res. 2002 Jan 1;30(1):341-2. doi: 10.1093/nar/30.1.341. Nucleic Acids Res. 2002. PMID: 11752331 Free PMC article.

9

Histone and histone fold sequences and structures: a database.

Baxevanis AD, Landsman D. Baxevanis AD, et al. Among authors: landsman d. Nucleic Acids Res. 1997 Jan 1;25(1):272-3. doi: 10.1093/nar/25.1.272. Nucleic Acids Res. 1997. PMID: 9016552 Free PMC article.

10

Histone Sequence Database: new histone fold family members.

Baxevanis AD, Landsman D. Baxevanis AD, et al. Among authors: landsman d. Nucleic Acids Res. 1998 Jan 1;26(1):372-5. doi: 10.1093/nar/26.1.372. Nucleic Acids Res. 1998. PMID: 9399877 Free PMC article.

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