Rodin AS - Search Results

1

BaNDyT: Bayesian Network modeling of molecular Dynamics Trajectories.

Mukhaleva E, Manookian B, Chen H, Ma N, Wei W, Urbaniak K, Gogoshin G, Bhattacharya S, Vaidehi N, Rodin AS, Branciamore S. Mukhaleva E, et al. Among authors: rodin as. bioRxiv [Preprint]. 2024 Nov 8:2024.11.06.622318. doi: 10.1101/2024.11.06.622318. bioRxiv. 2024. Update in: J Chem Inf Model. 2025 Feb 10;65(3):1278-1288. doi: 10.1021/acs.jcim.4c01981. PMID: 39574638 Free PMC article. Updated. Preprint.

2

Systems biology data analysis methodology in pharmacogenomics.

Rodin AS, Gogoshin G, Boerwinkle E. Rodin AS, et al. Pharmacogenomics. 2011 Sep;12(9):1349-60. doi: 10.2217/pgs.11.76. Pharmacogenomics. 2011. PMID: 21919609 Free PMC article. Review.

3

Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo.

Branciamore S, Rodin AS, Riggs AD, Rodin SN. Branciamore S, et al. Among authors: rodin sn, rodin as. Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6353-8. doi: 10.1073/pnas.1402585111. Epub 2014 Apr 14. Proc Natl Acad Sci U S A. 2014. PMID: 24733912 Free PMC article.

4

Longitudinal epigenetic and gene expression profiles analyzed by three-component analysis reveal down-regulation of genes involved in protein translation in human aging.

Jung M, Jin SG, Zhang X, Xiong W, Gogoshin G, Rodin AS, Pfeifer GP. Jung M, et al. Among authors: rodin as. Nucleic Acids Res. 2015 Sep 3;43(15):e100. doi: 10.1093/nar/gkv473. Epub 2015 May 14. Nucleic Acids Res. 2015. PMID: 25977295 Free PMC article.

5

New Algorithm and Software (BNOmics) for Inferring and Visualizing Bayesian Networks from Heterogeneous Big Biological and Genetic Data.

Gogoshin G, Boerwinkle E, Rodin AS. Gogoshin G, et al. Among authors: rodin as. J Comput Biol. 2017 Apr;24(4):340-356. doi: 10.1089/cmb.2016.0100. Epub 2016 Sep 28. J Comput Biol. 2017. PMID: 27681505 Free PMC article.

6

Analysis of high-resolution 3D intrachromosomal interactions aided by Bayesian network modeling.

Zhang X, Branciamore S, Gogoshin G, Rodin AS, Riggs AD. Zhang X, et al. Among authors: rodin as. Proc Natl Acad Sci U S A. 2017 Nov 28;114(48):E10359-E10368. doi: 10.1073/pnas.1620425114. Epub 2017 Nov 13. Proc Natl Acad Sci U S A. 2017. PMID: 29133398 Free PMC article.

7

Intrinsic Properties of tRNA Molecules as Deciphered via Bayesian Network and Distribution Divergence Analysis.

Branciamore S, Gogoshin G, Di Giulio M, Rodin AS. Branciamore S, et al. Among authors: rodin as. Life (Basel). 2018 Feb 8;8(1):5. doi: 10.3390/life8010005. Life (Basel). 2018. PMID: 29419741 Free PMC article.

8

Dependency Between Protein-Protein Interactions and Protein Variability and Evolutionary Rates in Vertebrates: Observed Relationships and Stochastic Modeling.

Wang X, Branciamore S, Gogoshin G, Rodin AS. Wang X, et al. Among authors: rodin as. J Mol Evol. 2019 Jul;87(4-6):184-198. doi: 10.1007/s00239-019-09899-z. Epub 2019 Jul 13. J Mol Evol. 2019. PMID: 31302723 Free PMC article.

9

Single-Cell RNA-Seq Mapping of Human Thymopoiesis Reveals Lineage Specification Trajectories and a Commitment Spectrum in T Cell Development.

Le J, Park JE, Ha VL, Luong A, Branciamore S, Rodin AS, Gogoshin G, Li F, Loh YE, Camacho V, Patel SB, Welner RS, Parekh C. Le J, et al. Among authors: rodin as. Immunity. 2020 Jun 16;52(6):1105-1118.e9. doi: 10.1016/j.immuni.2020.05.010. Immunity. 2020. PMID: 32553173 Free PMC article.

10

New Analysis Framework Incorporating Mixed Mutual Information and Scalable Bayesian Networks for Multimodal High Dimensional Genomic and Epigenomic Cancer Data.

Wang X, Branciamore S, Gogoshin G, Ding S, Rodin AS. Wang X, et al. Among authors: rodin as. Front Genet. 2020 Jun 18;11:648. doi: 10.3389/fgene.2020.00648. eCollection 2020. Front Genet. 2020. PMID: 32625238 Free PMC article.

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