Jin X - Search Results

1

Comprehensive profiling of genomic invertons in defined gut microbial community reveals associations with intestinal colonization and surface adhesion.

Jin X, Cheng AG, Chanin RB, Yu FB, Dimas A, Jasper M, Weakley A, Yan J, Bhatt AS, Pollard KS. Jin X, et al. Microbiome. 2025 Mar 10;13(1):71. doi: 10.1186/s40168-025-02052-7. Microbiome. 2025. PMID: 40059174 Free PMC article.

2

Genome-wide variability in recombination activity is associated with meiotic chromatin organization.

Jin X, Fudenberg G, Pollard KS. Jin X, et al. Genome Res. 2021 Sep;31(9):1561-1572. doi: 10.1101/gr.275358.121. Epub 2021 Jul 23. Genome Res. 2021. PMID: 34301629 Free PMC article.

3

Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization.

Jin X, Yu FB, Yan J, Weakley AM, Dubinkina V, Meng X, Pollard KS. Jin X, et al. Nat Commun. 2023 Jun 14;14(1):3510. doi: 10.1038/s41467-023-39121-0. Nat Commun. 2023. PMID: 37316519 Free PMC article.

4

Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC.

Smith BJ, Zhao C, Dubinkina V, Jin X, Zahavi L, Shoer S, Moltzau-Anderson J, Segal E, Pollard KS. Smith BJ, et al. Among authors: jin x. Genome Res. 2025 May 2;35(5):1247-1260. doi: 10.1101/gr.279543.124. Genome Res. 2025. PMID: 40210439 Free PMC article.

5

Nonlinear delay differential equations and their application to modeling biological network motifs.

Glass DS, Jin X, Riedel-Kruse IH. Glass DS, et al. Among authors: jin x. Nat Commun. 2021 Mar 19;12(1):1788. doi: 10.1038/s41467-021-21700-8. Nat Commun. 2021. PMID: 33741909 Free PMC article.

6

Optogenetic patterning generates multi-strain biofilms with spatially distributed antibiotic resistance.

Jin X, Riedel-Kruse IH. Jin X, et al. Nat Commun. 2024 Nov 1;15(1):9443. doi: 10.1038/s41467-024-53546-1. Nat Commun. 2024. PMID: 39487123 Free PMC article.

7

Engineering and modeling of multicellular morphologies and patterns.

Kim H, Jin X, Glass DS, Riedel-Kruse IH. Kim H, et al. Among authors: jin x. Curr Opin Genet Dev. 2020 Aug;63:95-102. doi: 10.1016/j.gde.2020.05.039. Epub 2020 Jul 3. Curr Opin Genet Dev. 2020. PMID: 32629326 Review.

8

High-resolution Patterned Biofilm Deposition Using pDawn-Ag43.

Jin X, Riedel-Kruse IH. Jin X, et al. J Vis Exp. 2018 Oct 23;(140):58625. doi: 10.3791/58625. J Vis Exp. 2018. PMID: 30417874 Free PMC article.

9

Signaling Delays Preclude Defects in Lateral Inhibition Patterning.

Glass DS, Jin X, Riedel-Kruse IH. Glass DS, et al. Among authors: jin x. Phys Rev Lett. 2016 Mar 25;116(12):128102. doi: 10.1103/PhysRevLett.116.128102. Epub 2016 Mar 22. Phys Rev Lett. 2016. PMID: 27058104

10

Biofilm Lithography enables high-resolution cell patterning via optogenetic adhesin expression.

Jin X, Riedel-Kruse IH. Jin X, et al. Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):3698-3703. doi: 10.1073/pnas.1720676115. Epub 2018 Mar 19. Proc Natl Acad Sci U S A. 2018. PMID: 29555779 Free PMC article.

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