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Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods.
Tercan B, Apolonio VH, Chagas VS, Wong CK, Lee JA, Yau C, Benz CC, Stuart JM, Karlberg BJ, Ellrott K, Grewal JK, Jones SJM; Cancer Genome Atlas Analysis Network; Zenklusen JC, Robertson AG, Laird PW, Cherniack AD, Castro MAA. Tercan B, et al. Among authors: lee ja. STAR Protoc. 2025 Jun 20;6(2):103681. doi: 10.1016/j.xpro.2025.103681. Epub 2025 Mar 18. STAR Protoc. 2025. PMID: 40106435 Free PMC article.
Exploring Integrative Analysis Using the BioMedical Evidence Graph.
Struck A, Walsh B, Buchanan A, Lee JA, Spangler R, Stuart JM, Ellrott K. Struck A, et al. Among authors: lee ja. JCO Clin Cancer Inform. 2020 Feb;4:147-159. doi: 10.1200/CCI.19.00110. JCO Clin Cancer Inform. 2020. PMID: 32097025 Free PMC article.
Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.
Ellrott K, Wong CK, Yau C, Castro MAA, Lee JA, Karlberg BJ, Grewal JK, Lagani V, Tercan B, Friedl V, Hinoue T, Uzunangelov V, Westlake L, Loinaz X, Felau I, Wang PI, Kemal A, Caesar-Johnson SJ, Shmulevich I, Lazar AJ, Tsamardinos I, Hoadley KA; Cancer Genome Atlas Analysis Network; Robertson AG, Knijnenburg TA, Benz CC, Stuart JM, Zenklusen JC, Cherniack AD, Laird PW. Ellrott K, et al. Among authors: lee ja. Cancer Cell. 2025 Feb 10;43(2):195-212.e11. doi: 10.1016/j.ccell.2024.12.002. Epub 2025 Jan 2. Cancer Cell. 2025. PMID: 39753139 Free PMC article.
Protocol for obtaining cancer type and subtype predictions using subSCOPE.
Grewal JK, Robertson AG, Ellrott K, Wong CK, Lee JA, Yau C, Tercan B, Castro MAA, Benz CC; Cancer Genome Atlas Analysis Network; Zenklusen JC, Cherniack AD, Laird PW, Jones SJM. Grewal JK, et al. Among authors: lee ja. STAR Protoc. 2025 Jun 20;6(2):103705. doi: 10.1016/j.xpro.2025.103705. Epub 2025 Apr 10. STAR Protoc. 2025. PMID: 40202838 Free PMC article.
2,568 results