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96 results

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Page 1
A cost and community perspective on the barriers to microbiome data reuse.
Kelliher JM, Johnson LYD, Rodriguez FE, Saunders JK, Kroeger ME, Hanson B, Robinson AJ, Anthony WE, Van Goethem MW, Kiledal A, Shibl AA, de Andrade AAS, Ettinger CL, Gupta CL, Robinson CRP, Zuniga C, Sprockett D, Machado DT, Skoog EJ, Oduwole I, Rothman JA, Prime K, Lane KR, Lemos LN, Karstens L, McCauley M, Seyoum MM, Elmassry MM, Guzel M, Longley R, Roux S, Pitot TM, Eloe-Fadrosh EA. Kelliher JM, et al. Among authors: eloe fadrosh ea. Front Bioinform. 2025 Apr 9;5:1585717. doi: 10.3389/fbinf.2025.1585717. eCollection 2025. Front Bioinform. 2025. PMID: 40270679 Free PMC article.
Microbiome data management in action workshop: Atlanta, GA, USA, June 12-13, 2024.
Kelliher JM, Aljumaah M, Bordenstein SR, Brister JR, Chain PSG, Dundore-Arias JP, Emerson JB, Fernandes VMC, Flores R, Gonzalez A, Hansen ZA, Hatcher EL, Jackson SA, Kellogg CA, Madupu R, Miller CML, Mirzayi C, Moustafa AM, Mungall C, Oliver A, Pariente N, Pett-Ridge J, Record S, Reji L, Reysenbach AL, Rich VI, Richardson L, Schriml LM, Shabman RS, Sierra MA, Sullivan MB, Sundaramurthy P, Thibault KM, Thompson LR, Tighe S, Vereen E, Eloe-Fadrosh EA. Kelliher JM, et al. Among authors: eloe fadrosh ea. Environ Microbiome. 2025 Apr 19;20(1):40. doi: 10.1186/s40793-025-00702-9. Environ Microbiome. 2025. PMID: 40253432 Free PMC article.
A blueprint for contemporary studies of microbiomes.
Bindels LB, Watts JEM, Theis KR, Carrion VJ, Ossowicki A, Seifert J, Oh J, Shao Y, Hilty M, Kumar P, Hildebrand F, Lovejoy C, Wigley P, Yu K, Zhang M, Zhang T, Walter J, Desai MS, Huws SA, Schriml LM, Ravel J, Fricke WF, Eloe-Fadrosh EA, Lee CK, Clavel T. Bindels LB, et al. Among authors: eloe fadrosh ea. Microbiome. 2025 Apr 8;13(1):95. doi: 10.1186/s40168-025-02091-0. Microbiome. 2025. PMID: 40200306 Free PMC article.
Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
Fuchsman CA, Cram JA, Huntemann M, Riley R, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy T, Daum C, Copeland A, Chen I-MA, Ivanova NN, Kyrpides NC, Graham D, Eloe-Fadrosh EA, Malkin SY. Fuchsman CA, et al. Among authors: eloe fadrosh ea. Microbiol Resour Announc. 2025 Apr 10;14(4):e0008425. doi: 10.1128/mra.00084-25. Epub 2025 Mar 25. Microbiol Resour Announc. 2025. PMID: 40130924 Free PMC article.
Quantifying the impact of workshops promoting microbiome data standards and data stewardship.
Kelliher JM, Rodriguez FE, Johnson LYD, Roux S, Smith M, Clum A, Lynch W, Bias CH, Finks SS, Keenum I, Kiledal EA, Lin HA, Longley R, McDonald R, Pitot TM, Rodríguez-Ramos J, Shen J, Sprockett DD, Swift J, Yadav A, Eloe-Fadrosh EA. Kelliher JM, et al. Among authors: eloe fadrosh ea. Sci Rep. 2025 Mar 22;15(1):9887. doi: 10.1038/s41598-025-89991-1. Sci Rep. 2025. PMID: 40121238 Free PMC article.
Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource.
Kelliher JM, Xu Y, Flynn MC, Babinski M, Canon S, Cavanna E, Clum A, Corilo YE, Fujimoto G, Giberson C, Johnson LYD, Li KJ, Li PE, Li V, Lo CC, Lynch W, Piehowski P, Prime K, Purvine S, Rodriguez F, Roux S, Shakya M, Smith M, Sarrafan S, Cholia S, McCue LA, Mungall C, Hu B, Eloe-Fadrosh EA, Chain PSG. Kelliher JM, et al. Among authors: eloe fadrosh ea. Comput Struct Biotechnol J. 2024 Sep 27;23:3575-3583. doi: 10.1016/j.csbj.2024.09.018. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39963423 Free PMC article.
Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Nunn BL, Timmins-Schiffman E, Mudge MC, Plubell DL, Chebli G, Kubanek J, Riffle M, Noble WS, Harvey E, Nunn TA, Rynearson T, Huntemann M, LaButti K, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Eloe-Fadrosh EA. Nunn BL, et al. Among authors: eloe fadrosh ea. Sci Data. 2025 Jan 20;12(1):113. doi: 10.1038/s41597-025-04445-7. Sci Data. 2025. PMID: 39833183 Free PMC article. No abstract available.
Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Nunn BL, Timmins-Schiffman E, Mudge MC, Plubell DL, Chebli G, Kubanek J, Riffle M, Noble WS, Harvey E, Nunn TA, Rynearson T, Huntemann M, LaButti K, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Eloe-Fadrosh EA. Nunn BL, et al. Among authors: eloe fadrosh ea. Sci Data. 2024 Nov 22;11(1):1270. doi: 10.1038/s41597-024-04013-5. Sci Data. 2024. PMID: 39578464 Free PMC article.
A functional microbiome catalogue crowdsourced from North American rivers.
Borton MA, McGivern BB, Willi KR, Woodcroft BJ, Mosier AC, Singleton DM, Bambakidis T, Pelly A, Daly RA, Liu F, Freiburger A, Edirisinghe JN, Faria JP, Danczak R, Leleiwi I, Goldman AE, Wilkins MJ, Hall EK, Pennacchio C, Roux S, Eloe-Fadrosh EA, Good SP, Sullivan MB, Wood-Charlson EM, Miller CS, Ross MRV, Henry CS, Crump BC, Stegen JC, Wrighton KC. Borton MA, et al. Among authors: eloe fadrosh ea. Nature. 2025 Jan;637(8044):103-112. doi: 10.1038/s41586-024-08240-z. Epub 2024 Nov 20. Nature. 2025. PMID: 39567690 Free PMC article.
96 results