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The impact of breast radiotherapy on the tumor genome and immune ecosystem.
Schalck A, Tran T, Li J, Sei E, Bai S, Hu M, Lin J, Bright SJ, Reddick S, Yang F, Batra H, Contreras A, Raso MG, Stauder MC, Hoffman KE, Reddy JP, Nead KT, Smith BD, Sawakuchi GO, Woodward WA, Watowich SS, Litton JK, Bedrosian I, Mittendorf EA, Le-Petross H, Navin NE, Shaitelman SF. Schalck A, et al. Among authors: tran t. Cell Rep. 2025 May 27;44(5):115703. doi: 10.1016/j.celrep.2025.115703. Epub 2025 May 14. Cell Rep. 2025. PMID: 40378044 Free article.
Archival single-cell genomics reveals persistent subclones during DCIS progression.
Wang K, Kumar T, Wang J, Minussi DC, Sei E, Li J, Tran TM, Thennavan A, Hu M, Casasent AK, Xiao Z, Bai S, Yang L, King LM, Shah V, Kristel P, van der Borden CL, Marks JR, Zhao Y, Zurita AJ, Aparicio A, Chapin B, Ye J, Zhang J, Gibbons DL; Grand Challenge PRECISION Consortium; Sawyer E, Thompson AM, Futreal A, Hwang ES, Wesseling J, Lips EH, Navin NE. Wang K, et al. Among authors: tran tm. Cell. 2023 Aug 31;186(18):3968-3982.e15. doi: 10.1016/j.cell.2023.07.024. Epub 2023 Aug 15. Cell. 2023. PMID: 37586362 Free PMC article.
A spatially resolved single-cell genomic atlas of the adult human breast.
Kumar T, Nee K, Wei R, He S, Nguyen QH, Bai S, Blake K, Pein M, Gong Y, Sei E, Hu M, Casasent AK, Thennavan A, Li J, Tran T, Chen K, Nilges B, Kashikar N, Braubach O, Ben Cheikh B, Nikulina N, Chen H, Teshome M, Menegaz B, Javaid H, Nagi C, Montalvan J, Lev T, Mallya S, Tifrea DF, Edwards R, Lin E, Parajuli R, Hanson S, Winocour S, Thompson A, Lim B, Lawson DA, Kessenbrock K, Navin N. Kumar T, et al. Among authors: tran t. Nature. 2023 Aug;620(7972):181-191. doi: 10.1038/s41586-023-06252-9. Epub 2023 Jun 28. Nature. 2023. PMID: 37380767 Free PMC article.
Anaplastic transformation in thyroid cancer revealed by single-cell transcriptomics.
Lu L, Wang JR, Henderson YC, Bai S, Yang J, Hu M, Shiau CK, Pan T, Yan Y, Tran TM, Li J, Kieser R, Zhao X, Wang J, Nurieva R, Williams MD, Cabanillas ME, Dadu R, Busaidy NL, Zafereo M, Navin N, Lai SY, Gao R. Lu L, et al. Among authors: tran tm. J Clin Invest. 2023 Jun 1;133(11):e169653. doi: 10.1172/JCI169653. J Clin Invest. 2023. PMID: 37053016 Free PMC article.
Immune landscape of isocitrate dehydrogenase-stratified primary and recurrent human gliomas.
Gupta P, Dang M, Oberai S, Migliozzi S, Trivedi R, Kumar G, Peshoff M, Milam N, Ahmed A, Bojja K, Tran TM, Gumin J, Kamiya-Matsuoka C, Huse J, Cox K, Li J, Shehwana H, Sheth SA, Saxon R, Baohua S, Parker Kerrigan B, Maheshwari A, Parra Cuentas ER, Navin NE, Heimberger AB, Lang FF, Iavarone A, Clise-Dwyer K, Wang L, Bhat KP. Gupta P, et al. Neuro Oncol. 2024 Dec 5;26(12):2239-2255. doi: 10.1093/neuonc/noae139. Neuro Oncol. 2024. PMID: 39126294
A spatially resolved single cell genomic atlas of the adult human breast.
Kumar T, Nee K, Wei R, He S, Nguyen QH, Bai S, Blake K, Gong Y, Pein M, Sei E, Hu M, Casasent A, Thennavan A, Li J, Tran T, Chen K, Nilges B, Kashikar N, Braubach O, Cheikh BB, Nikulina N, Chen H, Teshome M, Menegaz B, Javaid H, Nagi C, Montalvan J, Tifrea DF, Edwards R, Lin E, Parajuli R, Winocour S, Thompson A, Lim B, Lawson DA, Kessenbrock K, Navin N. Kumar T, et al. Among authors: tran t. bioRxiv [Preprint]. 2023 Apr 25:2023.04.22.537946. doi: 10.1101/2023.04.22.537946. bioRxiv. 2023. Update in: Nature. 2023 Aug;620(7972):181-191. doi: 10.1038/s41586-023-06252-9. PMID: 37163043 Free PMC article. Updated. Preprint.
Asynchronous Transitions from Hepatoblastoma to Carcinoma in High-Risk Pediatric Tumors.
Yu X, Sarabia S, Urbicain M, Somvanshi S, Patel R, Tran TM, Yeh YP, Chang KS, Lo YT, Epps J, Scorsone KA, Chiu HS, Hollingsworth EF, Perez CR, Najaf Panah MJ, Zorman B, Finegold M, Goss JA, Alaggio R, Roy A, Fisher KE, Heczey A, Woodfield S, Vasudevan S, Patel K, Chen TW, Lopez-Terrada D, Sumazin P. Yu X, et al. bioRxiv [Preprint]. 2024 Dec 27:2024.12.24.630261. doi: 10.1101/2024.12.24.630261. bioRxiv. 2024. PMID: 39763896 Free PMC article. Preprint.
Large-scale analysis of longitudinal skin gene expression in systemic sclerosis reveals relationships of immune cell and fibroblast activity with skin thickness and a trend towards normalisation over time.
Skaug B, Lyons MA, Swindell WR, Salazar GA, Wu M, Tran TM, Charles J, Vershel CP, Mayes MD, Assassi S. Skaug B, et al. Ann Rheum Dis. 2022 Apr;81(4):516-523. doi: 10.1136/annrheumdis-2021-221352. Epub 2021 Dec 22. Ann Rheum Dis. 2022. PMID: 34937693 Free PMC article.
7,406 results