Setty M - Search Results

1

Molecular profiling of adult C. elegans glia across sexes by single-nuclear RNA-seq.

Purice MD, Quitevis EJA, Manning RS, Severs LJ, Tran NT, Sorrentino V, Finkbeiner C, Wu F, Zager M, Setty M, Singhvi A. Purice MD, et al. Among authors: setty m. Dev Cell. 2025 Jun 11:S1534-5807(25)00324-7. doi: 10.1016/j.devcel.2025.05.013. Online ahead of print. Dev Cell. 2025. PMID: 40527319 Free article.

2

Molecular heterogeneity of C. elegans glia across sexes.

Purice MD, Quitevis EJA, Manning RS, Severs LJ, Tran NT, Sorrentino V, Setty M, Singhvi A. Purice MD, et al. Among authors: setty m. bioRxiv [Preprint]. 2023 Mar 24:2023.03.21.533668. doi: 10.1101/2023.03.21.533668. bioRxiv. 2023. Update in: Dev Cell. 2025 Jun 11:S1534-5807(25)00324-7. doi: 10.1016/j.devcel.2025.05.013. PMID: 36993469 Free PMC article. Updated. Preprint.

3

Defining cellular population dynamics at single-cell resolution during prostate cancer progression.

Germanos AA, Arora S, Zheng Y, Goddard ET, Coleman IM, Ku AT, Wilkinson S, Song H, Brady NJ, Amezquita RA, Zager M, Long A, Yang YC, Bielas JH, Gottardo R, Rickman DS, Huang FW, Ghajar CM, Nelson PS, Sowalsky AG, Setty M, Hsieh AC. Germanos AA, et al. Among authors: setty m. Elife. 2022 Dec 13;11:e79076. doi: 10.7554/eLife.79076. Elife. 2022. PMID: 36511483 Free PMC article.

4

Single-cell analysis of bidirectional reprogramming between early embryonic states identify mechanisms of differential lineage plasticities in mice.

Garg V, Yang Y, Nowotschin S, Setty M, Salataj E, Kuo YY, Murphy D, Sharma R, Jang A, Polyzos A, Pe'er D, Apostolou E, Hadjantonakis AK. Garg V, et al. Among authors: setty m. Dev Cell. 2025 Mar 24;60(6):901-917.e12. doi: 10.1016/j.devcel.2024.11.022. Epub 2024 Dec 26. Dev Cell. 2025. PMID: 39729987 Free PMC article.

5

Tissue Schematics: A framework to decipher tissue architecture and assembly.

Setty M. Setty M. Cell Syst. 2022 Feb 16;13(2):107-108. doi: 10.1016/j.cels.2022.01.004. Cell Syst. 2022. PMID: 35176232 Free article.

6

DUX4 expression in cancer induces a metastable early embryonic totipotent program.

Smith AA, Nip Y, Bennett SR, Hamm DC, Lemmers RJLF, van der Vliet PJ, Setty M, van der Maarel SM, Tapscott SJ. Smith AA, et al. Among authors: setty m. Cell Rep. 2023 Sep 26;42(9):113114. doi: 10.1016/j.celrep.2023.113114. Epub 2023 Sep 8. Cell Rep. 2023. PMID: 37691147 Free PMC article.

7

Quantifying Cell-State Densities in Single-Cell Phenotypic Landscapes using Mellon.

Otto D, Jordan C, Dury B, Dien C, Setty M. Otto D, et al. Among authors: setty m. bioRxiv [Preprint]. 2023 Jul 11:2023.07.09.548272. doi: 10.1101/2023.07.09.548272. bioRxiv. 2023. Update in: Nat Methods. 2024 Jul;21(7):1185-1195. doi: 10.1038/s41592-024-02302-w. PMID: 37502954 Free PMC article. Updated. Preprint.

8

CellRank for directed single-cell fate mapping.

Lange M, Bergen V, Klein M, Setty M, Reuter B, Bakhti M, Lickert H, Ansari M, Schniering J, Schiller HB, Pe'er D, Theis FJ. Lange M, et al. Among authors: setty m. Nat Methods. 2022 Feb;19(2):159-170. doi: 10.1038/s41592-021-01346-6. Epub 2022 Jan 13. Nat Methods. 2022. PMID: 35027767 Free PMC article.

9

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment.

Azizi E, Carr AJ, Plitas G, Cornish AE, Konopacki C, Prabhakaran S, Nainys J, Wu K, Kiseliovas V, Setty M, Choi K, Fromme RM, Dao P, McKenney PT, Wasti RC, Kadaveru K, Mazutis L, Rudensky AY, Pe'er D. Azizi E, et al. Among authors: setty m. Cell. 2018 Aug 23;174(5):1293-1308.e36. doi: 10.1016/j.cell.2018.05.060. Epub 2018 Jun 28. Cell. 2018. PMID: 29961579 Free PMC article.

10

SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data.

Persad S, Choo ZN, Dien C, Sohail N, Masilionis I, Chaligné R, Nawy T, Brown CC, Sharma R, Pe'er I, Setty M, Pe'er D. Persad S, et al. Among authors: setty m. Nat Biotechnol. 2023 Dec;41(12):1746-1757. doi: 10.1038/s41587-023-01716-9. Epub 2023 Mar 27. Nat Biotechnol. 2023. PMID: 36973557 Free PMC article.

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