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Page 1
Buenos Aires Breast Cancer Symposium 2024: bridging basic and clinical research in breast cancer.
Abba M, Behbod F, Ceppi P, Chammas R, Clarke R, Dalotto T, De Siervi A, Gómez Abuin G, Gottifredi V, Hoadley KA, Jerry J, Juric D, Kordon E, Lanari C, Lee A, Mahmoud YD, Mandó P, Maurer J, Mauro F, Miller T, Muller WJ, Novaro V, Oesterreich S, Park C, Pettit S, Razavi P, Richer J, Roqué M, Rossi M, Salaberry PJ, Salatino M, Sciacca M, Vallone SA, Vilarullo RN, Vivanco M, Waisberg F, Welm A, Wolos VJ. Abba M, et al. Among authors: hoadley ka. Medicina (B Aires). 2025;85(3):586-596. Medicina (B Aires). 2025. PMID: 40577145 Free article. English.
Protocol for obtaining cancer type and subtype predictions using subSCOPE.
Grewal JK, Robertson AG, Ellrott K, Wong CK, Lee JA, Yau C, Tercan B, Castro MAA, Benz CC; Cancer Genome Atlas Analysis Network; Zenklusen JC, Cherniack AD, Laird PW, Jones SJM. Grewal JK, et al. STAR Protoc. 2025 Jun 20;6(2):103705. doi: 10.1016/j.xpro.2025.103705. Epub 2025 Apr 10. STAR Protoc. 2025. PMID: 40202838 Free PMC article.
Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods.
Tercan B, Apolonio VH, Chagas VS, Wong CK, Lee JA, Yau C, Benz CC, Stuart JM, Karlberg BJ, Ellrott K, Grewal JK, Jones SJM; Cancer Genome Atlas Analysis Network; Zenklusen JC, Robertson AG, Laird PW, Cherniack AD, Castro MAA. Tercan B, et al. STAR Protoc. 2025 Jun 20;6(2):103681. doi: 10.1016/j.xpro.2025.103681. Epub 2025 Mar 18. STAR Protoc. 2025. PMID: 40106435 Free PMC article.
Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.
Ellrott K, Wong CK, Yau C, Castro MAA, Lee JA, Karlberg BJ, Grewal JK, Lagani V, Tercan B, Friedl V, Hinoue T, Uzunangelov V, Westlake L, Loinaz X, Felau I, Wang PI, Kemal A, Caesar-Johnson SJ, Shmulevich I, Lazar AJ, Tsamardinos I, Hoadley KA; Cancer Genome Atlas Analysis Network; Robertson AG, Knijnenburg TA, Benz CC, Stuart JM, Zenklusen JC, Cherniack AD, Laird PW. Ellrott K, et al. Among authors: hoadley ka. Cancer Cell. 2025 Feb 10;43(2):195-212.e11. doi: 10.1016/j.ccell.2024.12.002. Epub 2025 Jan 2. Cancer Cell. 2025. PMID: 39753139 Free PMC article.
Prognostic value of residual disease (RD) biology and gene expression changes during the neoadjuvant treatment in patients with HER2-positive early breast cancer (EBC).
Fernandez-Martinez A, Tanioka M, Ahn SG, Zagami P, Pascual T, Rediti M, Tang G, Hoadley KA, Venet D, Rashid NU, Spears PA, Di Cosimo S, de Azambuja E, Choudhury A, Rastogi P, Islam MN, Cortes J, Llombart-Cussac A, Swain SM, Sotiriou C, Prat A, Perou CM, Carey LA. Fernandez-Martinez A, et al. Among authors: hoadley ka. Ann Oncol. 2025 Apr;36(4):403-413. doi: 10.1016/j.annonc.2024.12.010. Epub 2024 Dec 18. Ann Oncol. 2025. PMID: 39706338 Free article.
Multimodal genome-wide survey of progressing and non-progressing breast ductal carcinoma in-situ.
Debeljak M, Cho S, Downs BM, Considine M, Avin-McKelvey B, Wang Y, Perez PN, Grizzle WE, Hoadley KA, Lynch CF, Hernandez BY, van Diest PJ, Cozen W, Hamilton AS, Hawes D, Gabrielson E, Cimino-Mathews A, Florea LD, Cope L, Umbricht CB. Debeljak M, et al. Among authors: hoadley ka. Breast Cancer Res. 2024 Dec 4;26(1):178. doi: 10.1186/s13058-024-01927-1. Breast Cancer Res. 2024. PMID: 39633428 Free PMC article.
279 results