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A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders.
Lee AS, Ayers LJ, Kosicki M, Chan WM, Fozo LN, Pratt BM, Collins TE, Zhao B, Rose MF, Sanchis-Juan A, Fu JM, Wong I, Zhao X, Tenney AP, Lee C, Laricchia KM, Barry BJ, Bradford VR, Jurgens JA, England EM, Lek M, MacArthur DG, Lee EA, Talkowski ME, Brand H, Pennacchio LA, Engle EC. Lee AS, et al. Nat Commun. 2024 Sep 27;15(1):8268. doi: 10.1038/s41467-024-52463-7. Nat Commun. 2024. PMID: 39333082 Free PMC article.
Preparing random states and benchmarking with many-body quantum chaos.
Choi J, Shaw AL, Madjarov IS, Xie X, Finkelstein R, Covey JP, Cotler JS, Mark DK, Huang HY, Kale A, Pichler H, Brandão FGSL, Choi S, Endres M. Choi J, et al. Nature. 2023 Jan;613(7944):468-473. doi: 10.1038/s41586-022-05442-1. Epub 2023 Jan 18. Nature. 2023. PMID: 36653567
A variant selection framework for genome graphs.
Jain C, Tavakoli N, Aluru S. Jain C, et al. Bioinformatics. 2021 Jul 12;37(Suppl_1):i460-i467. doi: 10.1093/bioinformatics/btab302. Bioinformatics. 2021. PMID: 34252945 Free PMC article.
De novo design of a fluorescence-activating β-barrel.
Dou J, Vorobieva AA, Sheffler W, Doyle LA, Park H, Bick MJ, Mao B, Foight GW, Lee MY, Gagnon LA, Carter L, Sankaran B, Ovchinnikov S, Marcos E, Huang PS, Vaughan JC, Stoddard BL, Baker D. Dou J, et al. Nature. 2018 Sep;561(7724):485-491. doi: 10.1038/s41586-018-0509-0. Epub 2018 Sep 12. Nature. 2018. PMID: 30209393 Free PMC article.
Electric-field-tuned topological phase transition in ultrathin Na3Bi.
Collins JL, Tadich A, Wu W, Gomes LC, Rodrigues JNB, Liu C, Hellerstedt J, Ryu H, Tang S, Mo SK, Adam S, Yang SA, Fuhrer MS, Edmonds MT. Collins JL, et al. Nature. 2018 Dec;564(7736):390-394. doi: 10.1038/s41586-018-0788-5. Epub 2018 Dec 10. Nature. 2018. PMID: 30532002 Free article.
31 results