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RNA-Seq analysis in MeV.
Howe EA, Sinha R, Schlauch D, Quackenbush J. Howe EA, et al. Bioinformatics. 2011 Nov 15;27(22):3209-10. doi: 10.1093/bioinformatics/btr490. Epub 2011 Oct 5. Bioinformatics. 2011. PMID: 21976420 Free PMC article.
Bioinformatics for next generation sequencing.
Bateman A, Quackenbush J. Bateman A, et al. Bioinformatics. 2009 Feb 15;25(4):429. doi: 10.1093/bioinformatics/btp037. Epub 2009 Feb 8. Bioinformatics. 2009. PMID: 19202193 No abstract available.
Post-publication sharing of data and tools.
Schofield PN, Bubela T, Weaver T, Portilla L, Brown SD, Hancock JM, Einhorn D, Tocchini-Valentini G, Hrabe de Angelis M, Rosenthal N; CASIMIR Rome Meeting participants. Schofield PN, et al. Nature. 2009 Sep 10;461(7261):171-3. doi: 10.1038/461171a. Nature. 2009. PMID: 19741686 Free PMC article.
Data standards for Omics data: the basis of data sharing and reuse.
Chervitz SA, Deutsch EW, Field D, Parkinson H, Quackenbush J, Rocca-Serra P, Sansone SA, Stoeckert CJ Jr, Taylor CF, Taylor R, Ball CA. Chervitz SA, et al. Methods Mol Biol. 2011;719:31-69. doi: 10.1007/978-1-61779-027-0_2. Methods Mol Biol. 2011. PMID: 21370078 Free PMC article. Review.