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Metagenome analysis using the Kraken software suite.
Lu J, Rincon N, Wood DE, Breitwieser FP, Pockrandt C, Langmead B, Salzberg SL, Steinegger M. Lu J, et al. Nat Protoc. 2022 Dec;17(12):2815-2839. doi: 10.1038/s41596-022-00738-y. Epub 2022 Sep 28. Nat Protoc. 2022. PMID: 36171387 Free PMC article. Review.
A scalable and unbiased discordance metric with H.
Dyjack N, Baker DN, Braverman V, Langmead B, Hicks SC. Dyjack N, et al. Biostatistics. 2023 Dec 15;25(1):188-202. doi: 10.1093/biostatistics/kxac035. Biostatistics. 2023. PMID: 36063544 Free PMC article.
Pangenomic genotyping with the marker array.
Mun T, Vaddadi NSK, Langmead B. Mun T, et al. Algorithms Mol Biol. 2023 May 5;18(1):2. doi: 10.1186/s13015-023-00225-3. Algorithms Mol Biol. 2023. PMID: 37147657 Free PMC article.
28 results