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Epigenetic and 3D genome reprogramming during the aging of human hippocampus.
Zemke NR, Lee S, Mamde S, Yang B, Berchtold N, Maximiliano Garduño B, Indralingam HS, Bartosik WM, Lau PK, Dong K, Yang A, Tani Y, Chen C, Zeng Q, Ajith V, Tong L, Seng C, Li D, Wang T, Xu X, Ren B. Zemke NR, et al. bioRxiv [Preprint]. 2024 Oct 17:2024.10.14.618338. doi: 10.1101/2024.10.14.618338. bioRxiv. 2024. PMID: 39463924 Free PMC article. Preprint.
An integrated view of the structure and function of the human 4D nucleome.
4D Nucleome Consortium; Dekker J, Oksuz BA, Zhang Y, Wang Y, Minsk MK, Kuang S, Yang L, Gibcus JH, Krietenstein N, Rando OJ, Xu J, Janssens DH, Henikoff S, Kukalev A, Willemin A, Winick-Ng W, Kempfer R, Pombo A, Yu M, Kumar P, Zhang L, Belmont AS, Sasaki T, van Schaik T, Brueckner L, Peric-Hupkes D, van Steensel B, Wang P, Chai H, Kim M, Ruan Y, Zhang R, Quinodoz SA, Bhat P, Guttman M, Zhao W, Chien S, Liu Y, Venev SV, Plewczynski D, Azcarate II, Szabó D, Thieme CJ, Szczepińska T, Chiliński M, Sengupta K, Conte M, Esposito A, Abraham A, Zhang R, Wang Y, Wen X, Wu Q, Yang Y, Liu J, Boninsegna L, Yildirim A, Zhan Y, Chiariello AM, Bianco S, Lee L, Hu M, Li Y, Barnett RJ, Cook AL, Emerson DJ, Marchal C, Zhao P, Park P, Alver BH, Schroeder A, Navelkar R, Bakker C, Ronchetti W, Ehmsen S, Veit A, Gehlenborg N, Wang T, Li D, Wang X, Nicodemi M, Ren B, Zhong S, Phillips-Cremins JE, Gilbert DM, Pollard KS, Alber F, Ma J, Noble WS, Yue F. 4D Nucleome Consortium, et al. bioRxiv [Preprint]. 2024 Oct 27:2024.09.17.613111. doi: 10.1101/2024.09.17.613111. bioRxiv. 2024. PMID: 39484446 Free PMC article. Preprint.
Psychedelics and Neural Plasticity: Therapeutic Implications.
Grieco SF, Castrén E, Knudsen GM, Kwan AC, Olson DE, Zuo Y, Holmes TC, Xu X. Grieco SF, et al. J Neurosci. 2022 Nov 9;42(45):8439-8449. doi: 10.1523/JNEUROSCI.1121-22.2022. J Neurosci. 2022. PMID: 36351821 Free PMC article.
Small data methods in omics: the power of one.
Johnston KG, Grieco SF, Nie Q, Theis FJ, Xu X. Johnston KG, et al. Nat Methods. 2024 Sep;21(9):1597-1602. doi: 10.1038/s41592-024-02390-8. Epub 2024 Aug 22. Nat Methods. 2024. PMID: 39174710 Free PMC article. Review.
Role of H3K4 monomethylation in gene regulation.
Wang Z, Ren B. Wang Z, et al. Curr Opin Genet Dev. 2024 Feb;84:102153. doi: 10.1016/j.gde.2024.102153. Epub 2024 Jan 26. Curr Opin Genet Dev. 2024. PMID: 38278054 Free PMC article. Review.
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