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Page 1
The sound of silence: Transgene silencing in mammalian cell engineering.
Cabrera A, Edelstein HI, Glykofrydis F, Love KS, Palacios S, Tycko J, Zhang M, Lensch S, Shields CE, Livingston M, Weiss R, Zhao H, Haynes KA, Morsut L, Chen YY, Khalil AS, Wong WW, Collins JJ, Rosser SJ, Polizzi K, Elowitz MB, Fussenegger M, Hilton IB, Leonard JN, Bintu L, Galloway KE, Deans TL. Cabrera A, et al. Cell Syst. 2022 Dec 21;13(12):950-973. doi: 10.1016/j.cels.2022.11.005. Cell Syst. 2022. PMID: 36549273 Free PMC article. Review.
Mammalian DNA Replication Timing.
Vouzas AE, Gilbert DM. Vouzas AE, et al. Cold Spring Harb Perspect Biol. 2021 Jul 1;13(7):a040162. doi: 10.1101/cshperspect.a040162. Cold Spring Harb Perspect Biol. 2021. PMID: 33558366 Free PMC article. Review.
Perturbations in 3D genome organization can promote acquired drug resistance.
Manjón AG, Manzo SG, Prekovic S, Potgeter L, van Schaik T, Liu NQ, Flach K, Peric-Hupkes D, Joosten S, Teunissen H, Friskes A, Ilic M, Hintzen D, Franceschini-Santos VH, Zwart W, de Wit E, van Steensel B, Medema RH. Manjón AG, et al. Cell Rep. 2023 Oct 31;42(10):113124. doi: 10.1016/j.celrep.2023.113124. Epub 2023 Sep 20. Cell Rep. 2023. PMID: 37733591 Free article.
An integrated view of the structure and function of the human 4D nucleome.
4D Nucleome Consortium; Dekker J, Oksuz BA, Zhang Y, Wang Y, Minsk MK, Kuang S, Yang L, Gibcus JH, Krietenstein N, Rando OJ, Xu J, Janssens DH, Henikoff S, Kukalev A, Willemin A, Winick-Ng W, Kempfer R, Pombo A, Yu M, Kumar P, Zhang L, Belmont AS, Sasaki T, van Schaik T, Brueckner L, Peric-Hupkes D, van Steensel B, Wang P, Chai H, Kim M, Ruan Y, Zhang R, Quinodoz SA, Bhat P, Guttman M, Zhao W, Chien S, Liu Y, Venev SV, Plewczynski D, Azcarate II, Szabó D, Thieme CJ, Szczepińska T, Chiliński M, Sengupta K, Conte M, Esposito A, Abraham A, Zhang R, Wang Y, Wen X, Wu Q, Yang Y, Liu J, Boninsegna L, Yildirim A, Zhan Y, Chiariello AM, Bianco S, Lee L, Hu M, Li Y, Barnett RJ, Cook AL, Emerson DJ, Marchal C, Zhao P, Park P, Alver BH, Schroeder A, Navelkar R, Bakker C, Ronchetti W, Ehmsen S, Veit A, Gehlenborg N, Wang T, Li D, Wang X, Nicodemi M, Ren B, Zhong S, Phillips-Cremins JE, Gilbert DM, Pollard KS, Alber F, Ma J, Noble WS, Yue F. 4D Nucleome Consortium, et al. bioRxiv [Preprint]. 2024 Oct 27:2024.09.17.613111. doi: 10.1101/2024.09.17.613111. bioRxiv. 2024. PMID: 39484446 Free PMC article. Preprint.
Control of DNA replication timing in the 3D genome.
Marchal C, Sima J, Gilbert DM. Marchal C, et al. Nat Rev Mol Cell Biol. 2019 Dec;20(12):721-737. doi: 10.1038/s41580-019-0162-y. Epub 2019 Sep 2. Nat Rev Mol Cell Biol. 2019. PMID: 31477886 Free PMC article. Review.
Genome organization around nuclear speckles.
Chen Y, Belmont AS. Chen Y, et al. Curr Opin Genet Dev. 2019 Apr;55:91-99. doi: 10.1016/j.gde.2019.06.008. Epub 2019 Aug 5. Curr Opin Genet Dev. 2019. PMID: 31394307 Free PMC article. Review.
Biosystems Design by Machine Learning.
Volk MJ, Lourentzou I, Mishra S, Vo LT, Zhai C, Zhao H. Volk MJ, et al. ACS Synth Biol. 2020 Jul 17;9(7):1514-1533. doi: 10.1021/acssynbio.0c00129. Epub 2020 Jun 29. ACS Synth Biol. 2020. PMID: 32485108 Review.
The 3D Genome Structure of Single Cells.
Zhou T, Zhang R, Ma J. Zhou T, et al. Annu Rev Biomed Data Sci. 2021 Jul 20;4:21-41. doi: 10.1146/annurev-biodatasci-020121-084709. Epub 2021 Apr 23. Annu Rev Biomed Data Sci. 2021. PMID: 34465168 Review.
72 results