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GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model.
Yang X, Liu G, Feng G, Bu D, Wang P, Jiang J, Chen S, Yang Q, Miao H, Zhang Y, Man Z, Liang Z, Wang Z, Li Y, Li Z, Liu Y, Tian Y, Liu W, Li C, Li A, Dong J, Hu Z, Fang C, Cui L, Deng Z, Jiang H, Cui W, Zhang J, Yang Z, Li H, He X, Zhong L, Zhou J, Wang Z, Long Q, Xu P; X-Compass Consortium; Wang H, Meng Z, Wang X, Wang Y, Wang Y, Zhang S, Guo J, Zhao Y, Zhou Y, Li F, Liu J, Chen Y, Yang G, Li X. Yang X, et al. Cell Res. 2024 Dec;34(12):830-845. doi: 10.1038/s41422-024-01034-y. Epub 2024 Oct 8. Cell Res. 2024. PMID: 39375485 Free PMC article.
scCompass: An Integrated Multi-Species scRNA-seq Database for AI-Ready.
Wang P, Liu W, Wang J, Liu Y, Li P, Xu P, Cui W, Zhang R, Long Q, Hu Z, Fang C, Dong J, Zhang C, Chen Y, Wang C, Liu G, Xie H, Zhang Y, Xiao M, Chen S, Jiang H; X‐Compass Consortium; Chen Y, Yang G, Zhang S, Meng Z, Wang X, Feng G, Li X, Zhou Y. Wang P, et al. Adv Sci (Weinh). 2025 May 2:e2500870. doi: 10.1002/advs.202500870. Online ahead of print. Adv Sci (Weinh). 2025. PMID: 40317650